List of changes in-between PyJibe releases.

version 0.8.6

  • build: bump afmformats from 0.12.2 to 0.12.4 (AttributeError when reading HDF5 files)

  • tests: deprecate test

version 0.8.5

  • build: migrate from travisCI to GitHub Actions

  • build: overhauled build pipeline (#9)

version 0.8.4

  • build: add pyinstaller hooks for afmformats

version 0.8.3

  • fix: main window not focused after startup

  • fix: Windows installation location was confusing and did not coincide configuration file location

  • fix: files are sorted before batch loading

  • fix: change visualization of fitting region by gray wraparound instead of yellow highlight (not visible on all screens)

  • setup: bump afmformats from 0.11.0 to 0.12.2 (improved JPK file format speed)

version 0.8.2

  • setup: bump matplotlib to >=3 (NavigationToolbar2QT modifications)

version 0.8.1

  • fix: correctly handle lmfit models with expressions

  • setup: bump nanite from 1.6.0 to 1.6.2 (improve contact point retrieval for bad data, check models during registration)

version 0.8.0

  • fix: exclude misplaced ‘available’ method from preprocessors

  • setup: bump nanite from 1.5.5 to 1.6.0 (improved contact point estimation - this may introduce small changes in the fit result which should not be significant, but which justify a new minor version)

version 0.7.6

  • maintenance release (fix macOS build)

  • setup: bump afmformats from 0.10.2 to 0.11.0

  • setup: bump nanite from 1.5.4 to 1.5.5

version 0.7.5

  • maintenance release (fix build)

version 0.7.4

  • setup: bump afmfomats from 0.10.0 to 0.10.2

  • setup: bump nanite from 1.5.2 to 1.5.4

  • build: add command-line option –version to just print the version and exit

version 0.7.3

  • fix: update initial parameters when the user edits the left fitting interval boundary

  • fix: conical indenter model did not work, because of a wrong (and unnecessary) entry in the human_units scheme.

version 0.7.2

  • fix: setting bad fit range lead to ValueError during plotting

version 0.7.1

  • fix: wrong SI units assigend to fit results parameters

  • setup: bump afmformats from 0.9.0 to 0.10.0 (new formats: JPK (.jpk-qi-data), AFM workshop (.csv), NT-MDT (.txt exported by Nova))

  • setup: bump nanite from 1.4.1 to 1.5.2

version 0.7.0

  • feat: add data conversion tool

  • enh: allow to select multiple files when loading data

  • ref: changed order and clarified meaning of options in file menu

  • setup: bump afmformats from 0.7.0 to 0.9.0 (fix HDF5 export, support new file formats)

version 0.6.8

  • setup: bump afmformats from 0.5.1 to 0.7.0 (improved metadata view in info tab)

  • setup: bump nanite from 1.4.1 to 1.5.1 (compatibility to afmformats)

  • enh: fit results and parameter export dialog now supports new groups in afmformats 0.7.0

  • enh: autosave now only stores fit results and rating parameters

  • enh: remember scroll position in info tab

version 0.6.7

  • setup: bump nanite from 1.4.0 to 1.4.1 (baseline is now a free parameter by default)

  • docs: add first tutorial (PAAm gels)

version 0.6.6

  • fix: typo lead to error when using rating threshold

version 0.6.5

  • build: macOS build failed due to PyInstaller issue 4626

version 0.6.4

  • fix: info tab did not display QMap metadata

  • fix: do not fit the entire dataset when applying a rating threshold but take the values from previous ratings

  • fix: deselecting curves of a qmap resulted in ValueError if QMap tab was selected

  • fix: set correct display range for residuals

  • docs: UI section for basics FD analysis

  • build: Windows build broken since 0.5.6

version 0.6.3

  • fix: support JPK data recorded in the “force-modulation” feedback mode (bump afmformats from 0.5.0 to 0.5.1)

  • fix: make sure ancillary parameters are computed from the initial parameters set in the user interface (not from the default model parameters)

version 0.6.2

  • enh: allow to select which metadata is exported

  • fix: do not apply and fit to all before exporting metadata (user may have performed individual fits)

  • setup: bump nanite from 1.3.0 to 1.4.0

version 0.6.1

  • build: workaround for Pyinstaller issue 4626

version 0.6.0

  • feat: initial support for ancillary parameters

  • fix: always display parameter units

  • fix: other minor UI bugs

  • setup: bump afmformats from 0.4.1 to 0.5.0

  • setup: bump nanite from 1.2.4 to 1.3.0

version 0.5.7

  • enh: allow to also set right part of fitting range individually

  • fix: improve layout of FD fitting panel

  • setup: bump nanite from 1.2.3 to 1.2.4 (improved default params)

version 0.5.6

  • setup: bump nanite from 1.2.2 to 1.2.3 (fixes issue with fits not being redone when the user changes an initial parameter)

  • fix: IndexError when editing the fitting range

version 0.5.5

  • maintenance release

version 0.5.4

  • enh: write maximum indentation to statistics file (#3)

  • fix: unicode characters were not read correctly from statistics file by libre office (added UTF-8 BOM)

version 0.5.3

  • enh: improved visualization of meta data parameters in the Info tab

  • setup: bump afmformats from 0.3.0 to 0.4.1

  • setup: bump nanite from 1.2.0 to 1.2.2

version 0.5.2

  • ref: bump nanite to 1.2.0

  • ref: migrate to afmformats (0.3.0)

version 0.5.1

  • fix: missing title in FD window and missing FD number in export menu

  • enh: add help menu with link to docs, about, and software used (#1)

  • docs: add quick guide for importing a nanite training set

  • docs: add black/white logo

version 0.5.0

  • feat: allow to import training sets produced with nanite

  • ref: major code refactoring of force-distance interface and cleanup

  • setup: bump nanite dependency to >=1.1.1

version 0.4.4

version 0.4.3

  • maintenance release (migrate to GitHub infrastructure)

  • experimental macOS builds

version 0.4.2

  • enh: merge training set and regressor selection into scheme selection (prevents confusion for users that are unsure what to choose)

  • enh: user rating is saved during rating, not afterwards

  • enh: rating containers for user rating can be reused explicitly

  • enh: qmap plot now better distinguishes between unavailable and invalid data

  • ref: migrate user rating output to nanite

version 0.4.1

  • fix: autoscaling according to fitting range did not work

  • fix: not possible to load .jpk-force-map files

  • ref: migrate qmap generation to nanite

version 0.4.0

  • migration to GitHub