Importing a pre-computed training set

A training set is a set of text files containing rating features and manual user ratings. Training sets are the basis of the rating scheme employed in PyJibe (and nanite) [MAM+19]. By default, PyJibe comes with the zef18 training set [MMG18]. For general information about how manual rating and generation of the training set works, please refer to the nanite rating workflow.

In order to import a training set into PyJibe, the text files (train_feat_*.txt and train_response.txt) must be zipped and named according to the scheme ts_NAME.zip, where NAME is a descriptive name.

_images/qg_import_ts.png

The import in PyJibe is carried out by selecting Add… in the Scheme dropdown menu, located in the Curve rating box (lower right of a Force-Distance analysis). A dialog will ask for the zipped training set (e.g. ts_organoids19.zip).

The import is persistent, i.e. the training set is extracted to the user’s configuration directory and thus does not have to be imported again the next time PyJibe is run.